Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SD78_0408 | SD78_0409 | Hypothetical protein. | Hypothetical protein. | 0.534 |
SD78_0409 | SD78_0408 | Hypothetical protein. | Hypothetical protein. | 0.534 |
SD78_0409 | SD78_1300 | Hypothetical protein. | Putative mercury resistance protein. | 0.500 |
SD78_0409 | SD78_1383 | Hypothetical protein. | Transcriptional regulator. | 0.476 |
SD78_0409 | SD78_1580 | Hypothetical protein. | Transcriptional regulator, MerR family. | 0.476 |
SD78_0409 | SD78_1883 | Hypothetical protein. | Transcriptional regulator, MerR family. | 0.476 |
SD78_0409 | SD78_4037 | Hypothetical protein. | Transcriptional regulator, MerR family, near polyamine transporter. | 0.476 |
SD78_1300 | SD78_0409 | Putative mercury resistance protein. | Hypothetical protein. | 0.500 |
SD78_1300 | SD78_1383 | Putative mercury resistance protein. | Transcriptional regulator. | 0.492 |
SD78_1300 | SD78_1580 | Putative mercury resistance protein. | Transcriptional regulator, MerR family. | 0.492 |
SD78_1300 | SD78_1883 | Putative mercury resistance protein. | Transcriptional regulator, MerR family. | 0.492 |
SD78_1300 | SD78_4037 | Putative mercury resistance protein. | Transcriptional regulator, MerR family, near polyamine transporter. | 0.492 |
SD78_1383 | SD78_0409 | Transcriptional regulator. | Hypothetical protein. | 0.476 |
SD78_1383 | SD78_1300 | Transcriptional regulator. | Putative mercury resistance protein. | 0.492 |
SD78_1383 | SD78_1580 | Transcriptional regulator. | Transcriptional regulator, MerR family. | 0.472 |
SD78_1383 | SD78_1883 | Transcriptional regulator. | Transcriptional regulator, MerR family. | 0.508 |
SD78_1383 | SD78_4037 | Transcriptional regulator. | Transcriptional regulator, MerR family, near polyamine transporter. | 0.496 |
SD78_1580 | SD78_0409 | Transcriptional regulator, MerR family. | Hypothetical protein. | 0.476 |
SD78_1580 | SD78_1300 | Transcriptional regulator, MerR family. | Putative mercury resistance protein. | 0.492 |
SD78_1580 | SD78_1383 | Transcriptional regulator, MerR family. | Transcriptional regulator. | 0.472 |
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