Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_0421 | SD78_0426 | SD78_0421 | SD78_0426 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar hook-associated protein FlgL. | 0.858 |
SD78_0421 | SD78_1243 | SD78_0421 | SD78_1243 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellin protein FlaA. | 0.583 |
SD78_0421 | SD78_3754 | SD78_0421 | SD78_3754 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.929 |
SD78_0421 | SD78_3767 | SD78_0421 | SD78_3767 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar motor switch protein FliM; One of the proteins that forms a switch complex that is proposed to be located at the base of the basal body. This complex interacts with chemotaxis proteins (such as CheY) in addition to contacting components of the motor that determine the direction of flagellar rotation; Belongs to the FliM family. | 0.927 |
SD78_0421 | SD78_3768 | SD78_0421 | SD78_3768 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.973 |
SD78_0421 | csrA | SD78_0421 | SD78_0423 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.610 |
SD78_0421 | flgK | SD78_0421 | SD78_0427 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar hook-associated protein FlgK. | 0.938 |
SD78_0421 | fliW | SD78_0421 | SD78_0424 | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.940 |
SD78_0422 | SD78_0426 | SD78_0422 | SD78_0426 | Flagellin protein FlaA. | Flagellar hook-associated protein FlgL. | 0.750 |
SD78_0422 | SD78_1243 | SD78_0422 | SD78_1243 | Flagellin protein FlaA. | Flagellin protein FlaA. | 0.487 |
SD78_0422 | SD78_3754 | SD78_0422 | SD78_3754 | Flagellin protein FlaA. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.929 |
SD78_0422 | SD78_3767 | SD78_0422 | SD78_3767 | Flagellin protein FlaA. | Flagellar motor switch protein FliM; One of the proteins that forms a switch complex that is proposed to be located at the base of the basal body. This complex interacts with chemotaxis proteins (such as CheY) in addition to contacting components of the motor that determine the direction of flagellar rotation; Belongs to the FliM family. | 0.926 |
SD78_0422 | SD78_3768 | SD78_0422 | SD78_3768 | Flagellin protein FlaA. | Flagellar motor switch protein FliN; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family. | 0.976 |
SD78_0422 | csrA | SD78_0422 | SD78_0423 | Flagellin protein FlaA. | Carbon storage regulator; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. | 0.809 |
SD78_0422 | flgK | SD78_0422 | SD78_0427 | Flagellin protein FlaA. | Flagellar hook-associated protein FlgK. | 0.961 |
SD78_0422 | fliW | SD78_0422 | SD78_0424 | Flagellin protein FlaA. | Flagellar assembly factor FliW; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum. | 0.977 |
SD78_0426 | SD78_0421 | SD78_0426 | SD78_0421 | Flagellar hook-associated protein FlgL. | Flagellin protein FlaA; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.858 |
SD78_0426 | SD78_0422 | SD78_0426 | SD78_0422 | Flagellar hook-associated protein FlgL. | Flagellin protein FlaA. | 0.750 |
SD78_0426 | SD78_1243 | SD78_0426 | SD78_1243 | Flagellar hook-associated protein FlgL. | Flagellin protein FlaA. | 0.581 |
SD78_0426 | SD78_3754 | SD78_0426 | SD78_3754 | Flagellar hook-associated protein FlgL. | Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family. | 0.967 |
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