Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SD78_0465 | SD78_0466 | Transcriptional regulator DegU, LuxR family. | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | 0.988 |
SD78_0465 | SD78_0547 | Transcriptional regulator DegU, LuxR family. | Two component sensor histidine kinase. | 0.919 |
SD78_0465 | SD78_1490 | Transcriptional regulator DegU, LuxR family. | Sensor histidine kinase. | 0.966 |
SD78_0465 | SD78_1605 | Transcriptional regulator DegU, LuxR family. | Phosphodiesterase. | 0.865 |
SD78_0465 | SD78_2107 | Transcriptional regulator DegU, LuxR family. | Phosphodiesterase. | 0.890 |
SD78_0465 | SD78_2633 | Transcriptional regulator DegU, LuxR family. | Two-component hybrid sensor and regulator. | 0.920 |
SD78_0465 | SD78_2833 | Transcriptional regulator DegU, LuxR family. | Serine/threonine protein kinase PrkC. | 0.953 |
SD78_0465 | SD78_3000 | Transcriptional regulator DegU, LuxR family. | Sensory box histidine kinase/response regulator. | 0.956 |
SD78_0465 | SD78_4009 | Transcriptional regulator DegU, LuxR family. | Sensor histidine kinase. | 0.864 |
SD78_0465 | SD78_4045 | Transcriptional regulator DegU, LuxR family. | Sensor histidine kinase VraS. | 0.931 |
SD78_0466 | SD78_0465 | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | Transcriptional regulator DegU, LuxR family. | 0.988 |
SD78_0466 | SD78_2107 | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | Phosphodiesterase. | 0.756 |
SD78_0466 | SD78_2633 | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | Two-component hybrid sensor and regulator. | 0.650 |
SD78_0466 | SD78_2833 | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | Serine/threonine protein kinase PrkC. | 0.758 |
SD78_0466 | SD78_3000 | Sensor protein DegS; Member of the two-component regulatory system DegS/DegU, which plays an important role in the transition growth phase. | Sensory box histidine kinase/response regulator. | 0.859 |
SD78_0547 | SD78_0465 | Two component sensor histidine kinase. | Transcriptional regulator DegU, LuxR family. | 0.919 |
SD78_0547 | SD78_2107 | Two component sensor histidine kinase. | Phosphodiesterase. | 0.756 |
SD78_0547 | SD78_2633 | Two component sensor histidine kinase. | Two-component hybrid sensor and regulator. | 0.650 |
SD78_0547 | SD78_2833 | Two component sensor histidine kinase. | Serine/threonine protein kinase PrkC. | 0.758 |
SD78_0547 | SD78_3000 | Two component sensor histidine kinase. | Sensory box histidine kinase/response regulator. | 0.859 |
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