Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_0071 | SD78_0707 | SD78_0071 | SD78_0707 | Cell wall endopeptidase. | Prespore specific transcriptional activator RsfA. | 0.770 |
SD78_0071 | SD78_0712 | SD78_0071 | SD78_0712 | Cell wall endopeptidase. | Hypothetical protein. | 0.763 |
SD78_0071 | SD78_1064 | SD78_0071 | SD78_1064 | Cell wall endopeptidase. | Spore germination protein GerD. | 0.769 |
SD78_0071 | SD78_2327 | SD78_0071 | SD78_2327 | Cell wall endopeptidase. | Stage III sporulation protein AH. | 0.756 |
SD78_0071 | SD78_2353 | SD78_0071 | SD78_2353 | Cell wall endopeptidase. | Putative protein YqhG. | 0.740 |
SD78_0071 | SD78_2565 | SD78_0071 | SD78_2565 | Cell wall endopeptidase. | Stage VI sporulation protein D. | 0.548 |
SD78_0071 | SD78_3430 | SD78_0071 | SD78_3430 | Cell wall endopeptidase. | Spore cortex-lytic enzyme CwlJ. | 0.738 |
SD78_0071 | SD78_3843 | SD78_0071 | SD78_3843 | Cell wall endopeptidase. | Outer spore coat protein E. | 0.771 |
SD78_0071 | SD78_4091 | SD78_0071 | SD78_4091 | Cell wall endopeptidase. | Outer membrane lipoprotein receptor. | 0.771 |
SD78_0071 | sspI | SD78_0071 | SD78_2616 | Cell wall endopeptidase. | Small, acid-soluble spore protein; Belongs to the SspI family. | 0.737 |
SD78_0707 | SD78_0071 | SD78_0707 | SD78_0071 | Prespore specific transcriptional activator RsfA. | Cell wall endopeptidase. | 0.770 |
SD78_0707 | SD78_0712 | SD78_0707 | SD78_0712 | Prespore specific transcriptional activator RsfA. | Hypothetical protein. | 0.769 |
SD78_0707 | SD78_1064 | SD78_0707 | SD78_1064 | Prespore specific transcriptional activator RsfA. | Spore germination protein GerD. | 0.774 |
SD78_0707 | SD78_2327 | SD78_0707 | SD78_2327 | Prespore specific transcriptional activator RsfA. | Stage III sporulation protein AH. | 0.788 |
SD78_0707 | SD78_2353 | SD78_0707 | SD78_2353 | Prespore specific transcriptional activator RsfA. | Putative protein YqhG. | 0.773 |
SD78_0707 | SD78_2565 | SD78_0707 | SD78_2565 | Prespore specific transcriptional activator RsfA. | Stage VI sporulation protein D. | 0.758 |
SD78_0707 | SD78_3430 | SD78_0707 | SD78_3430 | Prespore specific transcriptional activator RsfA. | Spore cortex-lytic enzyme CwlJ. | 0.713 |
SD78_0707 | SD78_3843 | SD78_0707 | SD78_3843 | Prespore specific transcriptional activator RsfA. | Outer spore coat protein E. | 0.774 |
SD78_0707 | SD78_4091 | SD78_0707 | SD78_4091 | Prespore specific transcriptional activator RsfA. | Outer membrane lipoprotein receptor. | 0.774 |
SD78_0707 | sspI | SD78_0707 | SD78_2616 | Prespore specific transcriptional activator RsfA. | Small, acid-soluble spore protein; Belongs to the SspI family. | 0.756 |
page 1 of 6