Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_0006 | SD78_0045 | SD78_0006 | SD78_0045 | Oxidoreductase ylbE. | Oxidoreductase ylbE. | 0.537 |
SD78_0006 | SD78_0766 | SD78_0006 | SD78_0766 | Oxidoreductase ylbE. | Putative oxidoreductase YncB. | 0.411 |
SD78_0006 | SD78_1479 | SD78_0006 | SD78_1479 | Oxidoreductase ylbE. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.531 |
SD78_0006 | SD78_3189 | SD78_0006 | SD78_3189 | Oxidoreductase ylbE. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.536 |
SD78_0045 | SD78_0006 | SD78_0045 | SD78_0006 | Oxidoreductase ylbE. | Oxidoreductase ylbE. | 0.537 |
SD78_0045 | SD78_0766 | SD78_0045 | SD78_0766 | Oxidoreductase ylbE. | Putative oxidoreductase YncB. | 0.542 |
SD78_0045 | SD78_0792 | SD78_0045 | SD78_0792 | Oxidoreductase ylbE. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.417 |
SD78_0045 | SD78_1479 | SD78_0045 | SD78_1479 | Oxidoreductase ylbE. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.400 |
SD78_0045 | SD78_3189 | SD78_0045 | SD78_3189 | Oxidoreductase ylbE. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.405 |
SD78_0765 | SD78_0766 | SD78_0765 | SD78_0766 | Hypothetical protein. | Putative oxidoreductase YncB. | 0.572 |
SD78_0766 | SD78_0006 | SD78_0766 | SD78_0006 | Putative oxidoreductase YncB. | Oxidoreductase ylbE. | 0.411 |
SD78_0766 | SD78_0045 | SD78_0766 | SD78_0045 | Putative oxidoreductase YncB. | Oxidoreductase ylbE. | 0.542 |
SD78_0766 | SD78_0765 | SD78_0766 | SD78_0765 | Putative oxidoreductase YncB. | Hypothetical protein. | 0.572 |
SD78_0766 | SD78_0767 | SD78_0766 | SD78_0767 | Putative oxidoreductase YncB. | Hypothetical protein. | 0.456 |
SD78_0766 | SD78_0792 | SD78_0766 | SD78_0792 | Putative oxidoreductase YncB. | Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide. | 0.468 |
SD78_0766 | SD78_1479 | SD78_0766 | SD78_1479 | Putative oxidoreductase YncB. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.516 |
SD78_0766 | SD78_3189 | SD78_0766 | SD78_3189 | Putative oxidoreductase YncB. | Oxidoreductase of aldo/keto reductase family, subgroup 1. | 0.454 |
SD78_0766 | fumC | SD78_0766 | SD78_3214 | Putative oxidoreductase YncB. | Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. | 0.528 |
SD78_0766 | sucD | SD78_0766 | SD78_3745 | Putative oxidoreductase YncB. | Succinyl-CoA ligase [ADP-forming] alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.475 |
SD78_0767 | SD78_0766 | SD78_0767 | SD78_0766 | Hypothetical protein. | Putative oxidoreductase YncB. | 0.456 |
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