STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SD78_0804Carbon monoxide dehydrogenase large chain. (781 aa)    
Predicted Functional Partners:
SD78_0803
Carbon monoxide dehydrogenase medium chain.
 
 0.999
SD78_0805
Carbon monoxide dehydrogenase small chain.
 0.999
SD78_0798
CTP:molybdopterin cytidylyltransferase.
 
   
 0.965
SD78_0806
Carbon monoxide oxidation accessory protein CoxG.
 
  
 0.946
SD78_0799
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
  
 0.919
SD78_0800
Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family.
 
  
 0.905
SD78_0801
Carbon monoxide oxidation accessory protein CoxE.
 
   
 0.884
SD78_0802
Carbon monoxide dehydrogenase D protein.
 
   
 0.878
pxpA
Lactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
       0.608
SD78_0808
Biotin carboxylase of methylcrotonyl-CoA carboxylase.
       0.589
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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