Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SD78_0201 | SD78_0749 | Two-component sensor histidine kinase. | Phosphodiesterase. | 0.999 |
SD78_0201 | SD78_1704 | Two-component sensor histidine kinase. | Phosphonate ABC transporter phosphate-binding periplasmic component. | 0.677 |
SD78_0201 | SD78_2107 | Two-component sensor histidine kinase. | Phosphodiesterase. | 0.999 |
SD78_0201 | SD78_2833 | Two-component sensor histidine kinase. | Serine/threonine protein kinase PrkC. | 0.996 |
SD78_0201 | SD78_3000 | Two-component sensor histidine kinase. | Sensory box histidine kinase/response regulator. | 0.999 |
SD78_0201 | SD78_4259 | Two-component sensor histidine kinase. | Two-component sensor histidine kinase. | 0.999 |
SD78_0749 | SD78_0201 | Phosphodiesterase. | Two-component sensor histidine kinase. | 0.999 |
SD78_0749 | SD78_1704 | Phosphodiesterase. | Phosphonate ABC transporter phosphate-binding periplasmic component. | 0.696 |
SD78_0749 | SD78_2107 | Phosphodiesterase. | Phosphodiesterase. | 0.999 |
SD78_0749 | SD78_2833 | Phosphodiesterase. | Serine/threonine protein kinase PrkC. | 0.999 |
SD78_0749 | SD78_3000 | Phosphodiesterase. | Sensory box histidine kinase/response regulator. | 0.999 |
SD78_0749 | SD78_4259 | Phosphodiesterase. | Two-component sensor histidine kinase. | 0.999 |
SD78_1702 | SD78_1703 | Phosphonate ABC transporter permease protein phnE. | Phosphonate ABC transporter ATP-binding protein. | 0.998 |
SD78_1702 | SD78_1704 | Phosphonate ABC transporter permease protein phnE. | Phosphonate ABC transporter phosphate-binding periplasmic component. | 0.984 |
SD78_1702 | SD78_1705 | Phosphonate ABC transporter permease protein phnE. | Alcohol dehydrogenase. | 0.698 |
SD78_1702 | SD78_1706 | Phosphonate ABC transporter permease protein phnE. | Phosphonoacetaldehyde hydrolase. | 0.872 |
SD78_1703 | SD78_1702 | Phosphonate ABC transporter ATP-binding protein. | Phosphonate ABC transporter permease protein phnE. | 0.998 |
SD78_1703 | SD78_1704 | Phosphonate ABC transporter ATP-binding protein. | Phosphonate ABC transporter phosphate-binding periplasmic component. | 0.995 |
SD78_1703 | SD78_1705 | Phosphonate ABC transporter ATP-binding protein. | Alcohol dehydrogenase. | 0.701 |
SD78_1703 | SD78_1706 | Phosphonate ABC transporter ATP-binding protein. | Phosphonoacetaldehyde hydrolase. | 0.861 |
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