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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SD78_1972ABC transporter ATP-binding protein. (239 aa)    
Predicted Functional Partners:
SD78_1971
ABC lipoprotein transporter, permease component.
 
 0.981
SD78_3296
Macrolide export ATP-binding/permease protein MacB.
 0.958
SD78_0577
Cell division protein FtsX.
 0.909
SD78_1970
Transcriptional regulator, PadR family.
 
     0.783
SD78_2067
Heme efflux system permease HrtB.
  
 0.778
SD78_0330
ABC transporter, permease.
  
 0.760
SD78_2991
Bacitracin export permease protein BceB.
  
 0.713
SD78_3170
ABC transporter permease protein YvcS.
  
 0.713
SD78_4091
Outer membrane lipoprotein receptor.
   
 
 0.708
SD78_3394
ABC transporter, permease protein.
  
  0.656
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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