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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
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[Homology]
Score
SD78_1982ABC transporter, ATP-binding protein. (288 aa)    
Predicted Functional Partners:
SD78_1983
Transcriptional regulator, GntR family.
 
  
 0.969
SD78_1981
Hypothetical protein.
 
     0.958
SD78_2492
Transcriptional regulator, GntR family.
 
    0.796
SD78_1984
Hypothetical protein.
       0.773
SD78_4335
ABC transporter, permease.
 
 
  0.746
SD78_4293
Transcriptional regulator, GntR family.
 
  
 0.736
SD78_1900
TOMM export ABC transporter, permease protein.
  
 
 0.733
SD78_3846
Lipid A export ATP-binding/permease protein MsbA.
  
  0.709
SD78_2390
Zinc ABC transporter, ATP-binding protein ZnuC.
 
  
 
0.706
SD78_0243
ABC transporter, permease protein.
 
   0.673
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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