Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SD78_1990Hypothetical protein. (232 aa)    
Predicted Functional Partners:
SD78_1369
Stage V sporulation protein AD (SpoVAD).
 
  
 0.657
SD78_3324
Stage V sporulation protein AE (SpoVAE).
 
  
 0.599
SD78_3323
Stage V sporulation protein AC (SpoVAC).
 
    0.587
SD78_0051
Spore germination protein.
 
  
 0.561
SD78_2949
Spore germination protein GerKA.
 
  
 0.551
SD78_2717
Sporulation protein.
  
     0.522
SD78_1989
Hypothetical protein.
       0.491
SD78_2210
Stage IV sporulation protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
     0.483
SD78_0073
Hypothetical protein.
  
     0.470
SD78_3674
RNA polymerase sporulation specific sigma factor SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
     0.469
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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