Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SD78_2161Hypothetical protein. (117 aa)    
Predicted Functional Partners:
SD78_2158
Putative exonuclease.
 
     0.788
SD78_0681
Hypothetical protein.
  
     0.739
SD78_0319
Hypothetical protein.
  
     0.728
SD78_0626
Hypothetical protein.
  
     0.714
SD78_1033
RsbR, positive regulator of sigma-B.
  
     0.708
SD78_3575
Hypothetical protein.
  
     0.704
SD78_2233
Ferric siderophore transport system, periplasmic binding protein TonB.
  
     0.702
SD78_2508
Hypothetical protein.
  
     0.687
SD78_2581
TPR repeat protein.
  
     0.677
SD78_3308
Hypothetical protein.
  
     0.670
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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