Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_0320 | SD78_2449 | SD78_0320 | SD78_2449 | Nucleotidase YfbR, HD superfamily. | dCMP deaminase. | 0.668 |
SD78_0320 | SD78_4057 | SD78_0320 | SD78_4057 | Nucleotidase YfbR, HD superfamily. | Putative FMN hydrolase. | 0.605 |
SD78_0320 | tdk | SD78_0320 | SD78_0670 | Nucleotidase YfbR, HD superfamily. | Thymidine kinase. | 0.603 |
SD78_0320 | tmk | SD78_0320 | SD78_1141 | Nucleotidase YfbR, HD superfamily. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.611 |
SD78_2185 | SD78_2449 | SD78_2185 | SD78_2449 | MazG nucleotide pyrophosphohydrolase. | dCMP deaminase. | 0.661 |
SD78_2185 | SD78_4057 | SD78_2185 | SD78_4057 | MazG nucleotide pyrophosphohydrolase. | Putative FMN hydrolase. | 0.602 |
SD78_2338 | SD78_2449 | SD78_2338 | SD78_2449 | Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific). | dCMP deaminase. | 0.704 |
SD78_2448 | SD78_2449 | SD78_2448 | SD78_2449 | Late competence protein ComEC, DNA transport. | dCMP deaminase. | 0.845 |
SD78_2448 | SD78_2450 | SD78_2448 | SD78_2450 | Late competence protein ComEC, DNA transport. | Late competence protein ComEA, DNA receptor. | 0.853 |
SD78_2449 | SD78_0320 | SD78_2449 | SD78_0320 | dCMP deaminase. | Nucleotidase YfbR, HD superfamily. | 0.668 |
SD78_2449 | SD78_2185 | SD78_2449 | SD78_2185 | dCMP deaminase. | MazG nucleotide pyrophosphohydrolase. | 0.661 |
SD78_2449 | SD78_2338 | SD78_2449 | SD78_2338 | dCMP deaminase. | Aminopeptidase YpdF (MP-, MA-, MS-, AP-, NP- specific). | 0.704 |
SD78_2449 | SD78_2448 | SD78_2449 | SD78_2448 | dCMP deaminase. | Late competence protein ComEC, DNA transport. | 0.845 |
SD78_2449 | SD78_2450 | SD78_2449 | SD78_2450 | dCMP deaminase. | Late competence protein ComEA, DNA receptor. | 0.736 |
SD78_2449 | SD78_4057 | SD78_2449 | SD78_4057 | dCMP deaminase. | Putative FMN hydrolase. | 0.649 |
SD78_2449 | hisF | SD78_2449 | SD78_0290 | dCMP deaminase. | Imidazole glycerol phosphate synthase cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.648 |
SD78_2449 | tdk | SD78_2449 | SD78_0670 | dCMP deaminase. | Thymidine kinase. | 0.723 |
SD78_2449 | thyA | SD78_2449 | SD78_2130 | dCMP deaminase. | Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis. | 0.754 |
SD78_2449 | tmk | SD78_2449 | SD78_1141 | dCMP deaminase. | Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.725 |
SD78_2450 | SD78_2448 | SD78_2450 | SD78_2448 | Late competence protein ComEA, DNA receptor. | Late competence protein ComEC, DNA transport. | 0.853 |
page 1 of 3