Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_2197 | SD78_2747 | SD78_2197 | SD78_2747 | Prephenate dehydrogenase. | Chorismate mutase I. | 0.981 |
SD78_2197 | aroA | SD78_2197 | SD78_2196 | Prephenate dehydrogenase. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.999 |
SD78_2197 | aroB | SD78_2197 | SD78_2200 | Prephenate dehydrogenase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.959 |
SD78_2197 | aroC | SD78_2197 | SD78_2201 | Prephenate dehydrogenase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.992 |
SD78_2197 | aroK | SD78_2197 | SD78_0526 | Prephenate dehydrogenase. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.841 |
SD78_2197 | menF | SD78_2197 | SD78_2800 | Prephenate dehydrogenase. | Menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate. | 0.669 |
SD78_2197 | pheA | SD78_2197 | SD78_2532 | Prephenate dehydrogenase. | Prephenate dehydratase. | 0.888 |
SD78_2197 | trpD | SD78_2197 | SD78_1336 | Prephenate dehydrogenase. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.883 |
SD78_2747 | SD78_2197 | SD78_2747 | SD78_2197 | Chorismate mutase I. | Prephenate dehydrogenase. | 0.981 |
SD78_2747 | SD78_2975 | SD78_2747 | SD78_2975 | Chorismate mutase I. | Shikimate 5-dehydrogenase I alpha. | 0.941 |
SD78_2747 | aroA | SD78_2747 | SD78_2196 | Chorismate mutase I. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.995 |
SD78_2747 | aroB | SD78_2747 | SD78_2200 | Chorismate mutase I. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.997 |
SD78_2747 | aroC | SD78_2747 | SD78_2201 | Chorismate mutase I. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.997 |
SD78_2747 | aroE | SD78_2747 | SD78_2457 | Chorismate mutase I. | Shikimate 5-dehydrogenase I alpha; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.933 |
SD78_2747 | aroK | SD78_2747 | SD78_0526 | Chorismate mutase I. | Shikimate kinase I; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.981 |
SD78_2747 | menF | SD78_2747 | SD78_2800 | Chorismate mutase I. | Menaquinone-specific isochorismate synthase; Catalyzes the conversion of chorismate to isochorismate. | 0.933 |
SD78_2747 | pheA | SD78_2747 | SD78_2532 | Chorismate mutase I. | Prephenate dehydratase. | 0.996 |
SD78_2747 | trpD | SD78_2747 | SD78_1336 | Chorismate mutase I. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.999 |
SD78_2975 | SD78_2747 | SD78_2975 | SD78_2747 | Shikimate 5-dehydrogenase I alpha. | Chorismate mutase I. | 0.941 |
SD78_2975 | aroA | SD78_2975 | SD78_2196 | Shikimate 5-dehydrogenase I alpha. | 5-Enolpyruvylshikimate-3-phosphate synthase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.987 |
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