STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SD78_3003TRAP-type C4-dicarboxylate transport system, large permease component. (422 aa)    
Predicted Functional Partners:
SD78_2966
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.930
SD78_3418
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 0.928
SD78_3004
Hypothetical protein.
  
 0.917
SD78_3005
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.879
SD78_2967
TRAP-type C4-dicarboxylate transport system, large permease component.
 
0.827
SD78_3419
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 0.824
SD78_2965
TRAP-type C4-dicarboxylate transport system, periplasmic component.
  
 0.810
SD78_3002
3-oxoacyl-[acyl-carrier protein] reductase.
       0.714
SD78_3182
Putative zinc-type alcohol dehydrogenase-like protein ybdR.
    
 0.506
SD78_3724
Malonyl CoA-acyl carrier protein transacylase.
  
 
  0.471
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.