Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SD78_0073 | SD78_0707 | Hypothetical protein. | Prespore specific transcriptional activator RsfA. | 0.597 |
SD78_0073 | SD78_2327 | Hypothetical protein. | Stage III sporulation protein AH. | 0.733 |
SD78_0073 | SD78_2701 | Hypothetical protein. | Putative Membrane Spanning Protein. | 0.412 |
SD78_0073 | SD78_3317 | Hypothetical protein. | Spore coat protein Y. | 0.535 |
SD78_0073 | SD78_3326 | Hypothetical protein. | Hypothetical protein. | 0.737 |
SD78_0073 | SD78_4091 | Hypothetical protein. | Outer membrane lipoprotein receptor. | 0.730 |
SD78_0707 | SD78_0073 | Prespore specific transcriptional activator RsfA. | Hypothetical protein. | 0.597 |
SD78_0707 | SD78_2327 | Prespore specific transcriptional activator RsfA. | Stage III sporulation protein AH. | 0.788 |
SD78_0707 | SD78_2397 | Prespore specific transcriptional activator RsfA. | Hypothetical protein. | 0.618 |
SD78_0707 | SD78_3282 | Prespore specific transcriptional activator RsfA. | Hypothetical protein. | 0.605 |
SD78_0707 | SD78_3326 | Prespore specific transcriptional activator RsfA. | Hypothetical protein. | 0.726 |
SD78_0707 | SD78_4091 | Prespore specific transcriptional activator RsfA. | Outer membrane lipoprotein receptor. | 0.774 |
SD78_2327 | SD78_0073 | Stage III sporulation protein AH. | Hypothetical protein. | 0.733 |
SD78_2327 | SD78_0707 | Stage III sporulation protein AH. | Prespore specific transcriptional activator RsfA. | 0.788 |
SD78_2327 | SD78_2397 | Stage III sporulation protein AH. | Hypothetical protein. | 0.709 |
SD78_2327 | SD78_2701 | Stage III sporulation protein AH. | Putative Membrane Spanning Protein. | 0.443 |
SD78_2327 | SD78_3282 | Stage III sporulation protein AH. | Hypothetical protein. | 0.751 |
SD78_2327 | SD78_3317 | Stage III sporulation protein AH. | Spore coat protein Y. | 0.517 |
SD78_2327 | SD78_3326 | Stage III sporulation protein AH. | Hypothetical protein. | 0.772 |
SD78_2327 | SD78_4091 | Stage III sporulation protein AH. | Outer membrane lipoprotein receptor. | 0.777 |
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