STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SD78_3454Catechol 1,2-dioxygenase. (256 aa)    
Predicted Functional Partners:
SD78_3458
Succinyl-CoA:3-ketoacid-coenzyme A transferase.
 
 
 0.899
SD78_3459
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 
 0.823
SD78_2955
Glyoxalase family protein.
  
  
 0.817
SD78_3455
Hydrolase, alpha/beta fold family.
 
  
 0.800
SD78_4272
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.796
pyrK
Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+).
 
 
 0.714
SD78_3456
Hypothetical protein.
  
 
 0.698
SD78_1620
Ferredoxin.
  
 
 0.694
SD78_1576
Hypothetical protein.
    
 0.673
SD78_3457
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A.
 
 
 0.664
Your Current Organism:
Bacillus badius
NCBI taxonomy Id: 1455
Other names: ATCC 14574, B. badius, Bacillus encimensis, Bacillus encimensis Dastager et al. 2015, Bacillus sp. SGD-V-25, CCUG 7412, CIP 58.52, DSM 23, DSM 28241 [[Bacillus encimensis]], IFO 15713, JCM 12228, LMG 7122, LMG:7122, NBRC 15713, NCIB 9364, NCIB:9364, NCIM 5513, NCTC 10333, NRRL NRS-663, VKM B-496, strain SGD-V-25 [[Bacillus encimensis]]
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