Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SD78_1005 | SD78_3567 | Aminopeptidase S (Leu, Val, Phe, Tyr preference). | Oligoendopeptidase F. | 0.449 |
SD78_1698 | SD78_3567 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Oligoendopeptidase F. | 0.487 |
SD78_1698 | SD78_4272 | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.439 |
SD78_3565 | SD78_3566 | Sensor histidine kinase KinD. | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | 0.499 |
SD78_3565 | SD78_3567 | Sensor histidine kinase KinD. | Oligoendopeptidase F. | 0.564 |
SD78_3565 | SD78_3568 | Sensor histidine kinase KinD. | Hypothetical protein. | 0.407 |
SD78_3566 | SD78_3565 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | Sensor histidine kinase KinD. | 0.499 |
SD78_3566 | SD78_3567 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | Oligoendopeptidase F. | 0.778 |
SD78_3566 | SD78_3568 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | Hypothetical protein. | 0.636 |
SD78_3566 | SD78_4272 | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.510 |
SD78_3567 | SD78_1005 | Oligoendopeptidase F. | Aminopeptidase S (Leu, Val, Phe, Tyr preference). | 0.449 |
SD78_3567 | SD78_1698 | Oligoendopeptidase F. | Diaminohydroxyphosphoribosylaminopyrimidine deaminase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.487 |
SD78_3567 | SD78_3565 | Oligoendopeptidase F. | Sensor histidine kinase KinD. | 0.564 |
SD78_3567 | SD78_3566 | Oligoendopeptidase F. | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | 0.778 |
SD78_3567 | SD78_3568 | Oligoendopeptidase F. | Hypothetical protein. | 0.636 |
SD78_3567 | SD78_3767 | Oligoendopeptidase F. | Flagellar motor switch protein FliM; One of the proteins that forms a switch complex that is proposed to be located at the base of the basal body. This complex interacts with chemotaxis proteins (such as CheY) in addition to contacting components of the motor that determine the direction of flagellar rotation; Belongs to the FliM family. | 0.575 |
SD78_3567 | SD78_4272 | Oligoendopeptidase F. | Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. | 0.493 |
SD78_3568 | SD78_3565 | Hypothetical protein. | Sensor histidine kinase KinD. | 0.407 |
SD78_3568 | SD78_3566 | Hypothetical protein. | 2',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. | 0.636 |
SD78_3568 | SD78_3567 | Hypothetical protein. | Oligoendopeptidase F. | 0.636 |
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