Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_3866 | SD78_3867 | SD78_3866 | SD78_3867 | Membrane protein. | Hypothetical protein. | 0.560 |
SD78_3866 | SD78_3869 | SD78_3866 | SD78_3869 | Membrane protein. | Aluminum resistance protein. | 0.599 |
SD78_3866 | SD78_3870 | SD78_3866 | SD78_3870 | Membrane protein. | Transcriptional regulator, MerR family. | 0.427 |
SD78_3866 | hflX | SD78_3866 | SD78_3868 | Membrane protein. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.630 |
SD78_3867 | SD78_3866 | SD78_3867 | SD78_3866 | Hypothetical protein. | Membrane protein. | 0.560 |
SD78_3867 | SD78_3869 | SD78_3867 | SD78_3869 | Hypothetical protein. | Aluminum resistance protein. | 0.718 |
SD78_3867 | SD78_3870 | SD78_3867 | SD78_3870 | Hypothetical protein. | Transcriptional regulator, MerR family. | 0.412 |
SD78_3867 | hflX | SD78_3867 | SD78_3868 | Hypothetical protein. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.773 |
SD78_3869 | SD78_3866 | SD78_3869 | SD78_3866 | Aluminum resistance protein. | Membrane protein. | 0.599 |
SD78_3869 | SD78_3867 | SD78_3869 | SD78_3867 | Aluminum resistance protein. | Hypothetical protein. | 0.718 |
SD78_3869 | SD78_3870 | SD78_3869 | SD78_3870 | Aluminum resistance protein. | Transcriptional regulator, MerR family. | 0.527 |
SD78_3869 | hflX | SD78_3869 | SD78_3868 | Aluminum resistance protein. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.833 |
SD78_3870 | SD78_3866 | SD78_3870 | SD78_3866 | Transcriptional regulator, MerR family. | Membrane protein. | 0.427 |
SD78_3870 | SD78_3867 | SD78_3870 | SD78_3867 | Transcriptional regulator, MerR family. | Hypothetical protein. | 0.412 |
SD78_3870 | SD78_3869 | SD78_3870 | SD78_3869 | Transcriptional regulator, MerR family. | Aluminum resistance protein. | 0.527 |
SD78_3870 | hflX | SD78_3870 | SD78_3868 | Transcriptional regulator, MerR family. | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | 0.505 |
hflX | SD78_3866 | SD78_3868 | SD78_3866 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Membrane protein. | 0.630 |
hflX | SD78_3867 | SD78_3868 | SD78_3867 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Hypothetical protein. | 0.773 |
hflX | SD78_3869 | SD78_3868 | SD78_3869 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Aluminum resistance protein. | 0.833 |
hflX | SD78_3870 | SD78_3868 | SD78_3870 | GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family. | Transcriptional regulator, MerR family. | 0.505 |