Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SD78_0234 | acpP | SD78_0234 | SD78_3726 | 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.848 |
SD78_0234 | acpS | SD78_0234 | SD78_4090 | 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.560 |
SD78_0234 | coaE | SD78_0234 | SD78_2677 | 4'-phosphopantetheinyl transferase; Belongs to the P-Pant transferase superfamily. | Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family. | 0.622 |
SD78_1191 | acpS | SD78_1191 | SD78_4090 | Dihydropteroate synthase; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.661 |
SD78_4088 | SD78_4089 | SD78_4088 | SD78_4089 | ydbS like protein. | ydbT like protein. | 0.951 |
SD78_4088 | SD78_4091 | SD78_4088 | SD78_4091 | ydbS like protein. | Outer membrane lipoprotein receptor. | 0.561 |
SD78_4088 | acpS | SD78_4088 | SD78_4090 | ydbS like protein. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.804 |
SD78_4088 | cshA | SD78_4088 | SD78_4087 | ydbS like protein. | DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.554 |
SD78_4089 | SD78_4088 | SD78_4089 | SD78_4088 | ydbT like protein. | ydbS like protein. | 0.951 |
SD78_4089 | SD78_4091 | SD78_4089 | SD78_4091 | ydbT like protein. | Outer membrane lipoprotein receptor. | 0.568 |
SD78_4089 | acpS | SD78_4089 | SD78_4090 | ydbT like protein. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.803 |
SD78_4089 | cshA | SD78_4089 | SD78_4087 | ydbT like protein. | DEAD-box ATP-dependent RNA helicase CshA; DEAD-box RNA helicase possibly involved in RNA degradation. Unwinds dsRNA in both 5'- and 3'-directions, has RNA-dependent ATPase activity; Belongs to the DEAD box helicase family. CshA subfamily. | 0.508 |
SD78_4091 | SD78_4088 | SD78_4091 | SD78_4088 | Outer membrane lipoprotein receptor. | ydbS like protein. | 0.561 |
SD78_4091 | SD78_4089 | SD78_4091 | SD78_4089 | Outer membrane lipoprotein receptor. | ydbT like protein. | 0.568 |
SD78_4091 | SD78_4093 | SD78_4091 | SD78_4093 | Outer membrane lipoprotein receptor. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.417 |
SD78_4091 | acpS | SD78_4091 | SD78_4090 | Outer membrane lipoprotein receptor. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.635 |
SD78_4093 | SD78_4091 | SD78_4093 | SD78_4091 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Outer membrane lipoprotein receptor. | 0.417 |
SD78_4093 | acpP | SD78_4093 | SD78_3726 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.634 |
SD78_4093 | acpS | SD78_4093 | SD78_4090 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Holo-[acyl-carrier protein] synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family. | 0.738 |
SD78_4093 | ddl | SD78_4093 | SD78_4084 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. | 0.870 |
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