STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_00530Copper resistance protein D. (292 aa)    
Predicted Functional Partners:
pcoC
Copper resistance protein C precursor.
 
  
 0.966
OSB_00500
Hypothetical protein.
 
     0.794
OSB_00510
Cytochrome c.
       0.751
OSB_00490
Hypothetical protein.
       0.575
actP
Copper-transporting P-type ATPase.
     
 0.518
OSB_00480
Hypothetical protein.
       0.472
OSB_28840
Pyridoxamine 5'-phosphate oxidase.
  
     0.470
OSB_00470
Cyclic nucleotide-binding domain protein.
 
     0.421
rhtB_3
Homoserine/homoserine lactone efflux protein.
  
     0.403
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.