STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glnM_1Putative glutamine ABC transporter permease protein GlnM. (410 aa)    
Predicted Functional Partners:
yhdY_2
Inner membrane amino-acid ABC transporter permease protein YhdY.
 
0.992
aapJ_1
General L-amino acid-binding periplasmic protein AapJ precursor.
 
 
 0.990
glnQ_1
Glutamine transport ATP-binding protein GlnQ.
 
 
 0.990
yhdY_1
Inner membrane amino-acid ABC transporter permease protein YhdY.
 
0.987
aapJ_2
General L-amino acid-binding periplasmic protein AapJ precursor.
 
 
 0.965
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
 
 
 0.963
gltK
Glutamate/aspartate transport system permease protein GltK.
  
  
 
0.919
glnQ_4
Glutamine transport ATP-binding protein GlnQ.
 
  
 0.821
hisM
Histidine transport system permease protein HisM.
  
  
  0.757
occP
Octopine permease ATP-binding protein P.
 
  
 0.751
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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