STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolG_1Inositol 2-dehydrogenase. (373 aa)    
Predicted Functional Partners:
OSB_03380
Xylose isomerase-like TIM barrel.
  
 0.989
lacF_1
Lactose transport system permease protein LacF.
 
   
 0.876
araQ_1
L-arabinose transport system permease protein AraQ.
 
     0.870
OSB_03340
Putative sugar-binding periplasmic protein precursor.
 
     0.841
iolE_1
Inosose dehydratase.
  
  
 0.814
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
     0.790
gfo_1
Glucose--fructose oxidoreductase precursor.
 
     0.754
melA
Alpha-galactosidase.
  
     0.617
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase; Belongs to the TPP enzyme family.
 
  
 0.581
gfo_4
Glucose--fructose oxidoreductase precursor.
  
     0.544
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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