STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_07280Bacterial type II secretion system protein F domain protein. (325 aa)    
Predicted Functional Partners:
OSB_07290
Bacterial type II secretion system protein F domain protein.
 
  
0.997
OSB_07300
Putative conjugal transfer protein.
 
  
 0.987
minD
Septum site-determining protein MinD.
 
  
 0.987
OSB_07340
Hypothetical protein.
 
  
 0.971
outD
Type II secretion system protein D precursor; Belongs to the bacterial secretin family.
 
  
 0.953
OSB_07260
Tetratricopeptide repeat protein.
 
  
 0.940
OSB_32970
Flagellar biosynthesis repressor FlbT.
   
    0.932
OSB_07270
Tetratricopeptide repeat protein.
 
  
 0.931
mpa
Proteasome-associated ATPase.
 
    0.916
OSB_07250
Type IV leader peptidase family protein.
 
   
 0.915
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.