STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
siaT_1Sialic acid TRAP transporter permease protein SiaT. (454 aa)    
Predicted Functional Partners:
OSB_07840
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
  
  0.992
OSB_07850
Monocarboxylate 2-oxoacid-binding periplasmic protein precursor.
 
 
 0.989
siaT_2
Sialic acid TRAP transporter permease protein SiaT.
 
  
 
0.934
dctP_1
C4-dicarboxylate-binding periplasmic protein precursor.
  
 
 0.927
OSB_07820
Hypothetical protein.
       0.773
yiaO_1
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
  
 0.731
yiaO_4
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
  
 0.722
OSB_19080
Monocarboxylate 2-oxoacid-binding periplasmic protein precursor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
 0.710
yiaO_2
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
  
 0.658
dctP_2
C4-dicarboxylate-binding periplasmic protein precursor.
  
 0.465
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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