STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
catD_13-oxoadipate enol-lactonase 2. (264 aa)    
Predicted Functional Partners:
catD_2
3-oxoadipate enol-lactonase 2.
  
  
 
0.920
catD_3
3-oxoadipate enol-lactonase 2.
  
  
 
0.907
OSB_20570
Carboxymuconolactone decarboxylase family protein.
  
 
 0.904
OSB_20580
Carboxymuconolactone decarboxylase family protein.
  
 
 0.904
pcaB
3-carboxy-cis,cis-muconate cycloisomerase.
  
 0.897
chqB
Hydroxyquinol 1,2-dioxygenase.
  
   
 0.723
OSB_08000
2-(hydroxymethyl)glutarate dehydrogenase.
       0.661
ydgJ_1
Putative oxidoreductase YdgJ.
  
    0.524
OSB_24420
Hypothetical protein.
   
 
  0.504
ydjP
AB hydrolase superfamily protein YdjP.
 
     0.499
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.