STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_08050Tripartite tricarboxylate transporter family receptor. (371 aa)    
Predicted Functional Partners:
OSB_08070
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.945
OSB_26740
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.882
OSB_29650
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.881
OSB_29670
Tripartite tricarboxylate transporter family receptor.
  
     0.712
yiaO_1
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
     0.643
ycjS
Putative oxidoreductase YcjS.
 
     0.633
OSB_08040
Carboxymuconolactone decarboxylase family protein.
       0.615
OSB_29660
Tripartite tricarboxylate transporter TctB family protein.
  
  
 0.608
OSB_08060
Tripartite tricarboxylate transporter TctB family protein.
       0.554
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.