STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_09450Ski2-like helicase. (892 aa)    
Predicted Functional Partners:
hslR
Heat shock protein 15.
       0.855
OSB_09440
Tetratricopeptide repeat protein.
       0.789
OSB_09430
SCP-2 sterol transfer family protein.
       0.697
OSB_09420
Lysophospholipase L2.
       0.688
carD
RNA polymerase-binding transcription factor CarD.
 
     0.687
fdxA_1
Ferredoxin-2; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.625
OSB_23320
GcrA cell cycle regulator.
  
     0.604
cobT
Aerobic cobaltochelatase subunit CobT.
  
     0.570
dnaJ_1
Chaperone protein DnaJ.
  
     0.555
OSB_28420
Hypothetical protein.
  
     0.543
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.