STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prsE_1Type I secretion system membrane fusion protein PrsE. (389 aa)    
Predicted Functional Partners:
apxIB
Toxin RTX-I translocation ATP-binding protein.
 
 0.987
OSB_11670
Outer membrane efflux protein.
 
 
 0.974
OSB_11660
Hypothetical protein.
 
  
 0.877
cya_2
Bifunctional hemolysin/adenylate cyclase precursor.
 
  
 0.678
prsD_1
Type I secretion system ATP-binding protein PrsD.
  
 0.676
prsD_2
Type I secretion system ATP-binding protein PrsD.
  
 0.674
OSB_00240
FtsX-like permease family protein.
  
  
 0.636
bepC
Outer membrane efflux protein BepC precursor.
  
 
 0.596
ttgI
Toluene efflux pump outer membrane protein TtgI precursor.
  
 
 0.596
cya_6
Bifunctional hemolysin/adenylate cyclase precursor.
 
  
 0.591
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.