STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydhFOxidoreductase YdhF. (294 aa)    
Predicted Functional Partners:
msuD
Methanesulfonate monooxygenase.
 
   
 0.965
mngR
Mannosyl-D-glycerate transport/metabolism system repressor MngR.
 
    0.925
afr
1,5-anhydro-D-fructose reductase.
 
     0.906
OSB_12320
Tripartite ATP-independent periplasmic transporter, DctQ component.
 
     0.880
ntaB
FMN reductase (NADH) NtaB.
     
 0.815
yiaO_3
2,3-diketo-L-gulonate-binding periplasmic protein YiaO precursor.
 
     0.767
siaT_4
Sialic acid TRAP transporter permease protein SiaT.
 
     0.647
yhdN_1
General stress protein 69.
  
     0.400
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.