STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppF_2Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily. (330 aa)    
Predicted Functional Partners:
gsiD_1
Glutathione transport system permease protein GsiD.
  
 0.987
gsiD_3
Glutathione transport system permease protein GsiD.
  
 0.987
dppB_1
Dipeptide transport system permease protein DppB.
 
 0.973
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.901
dppB_2
Dipeptide transport system permease protein DppB.
 
 0.899
gsiC_2
Glutathione transport system permease protein GsiC.
 
 0.897
dppC
Dipeptide transport system permease protein DppC.
  
 0.896
gsiC_1
Glutathione transport system permease protein GsiC.
 
 0.893
prsD_1
Type I secretion system ATP-binding protein PrsD.
 
     
0.863
nikA
Nickel-binding periplasmic protein precursor.
 
  
 0.818
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.