STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiA_1Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily. (696 aa)    
Predicted Functional Partners:
gsiD_2
Glutathione transport system permease protein GsiD.
 
  
 0.963
oppB
Oligopeptide transport system permease protein OppB.
  
 0.961
gsiD_3
Glutathione transport system permease protein GsiD.
  
 0.956
gsiD_1
Glutathione transport system permease protein GsiD.
  
 0.948
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.907
hbpA_2
Heme-binding protein A precursor.
 
  
 0.890
dppB_1
Dipeptide transport system permease protein DppB.
  
 0.718
OSB_08650
Fatty acid desaturase.
  
     0.715
OSB_08760
Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family.
  
     0.710
OSB_22450
Sarcosine oxidase, gamma subunit family.
  
     0.686
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.