STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_19860DNA-binding transcriptional activator SdiA. (160 aa)    
Predicted Functional Partners:
OSB_19840
Autoinducer synthetase.
 
  
 0.923
OSB_28200
Hypothetical protein.
  
     0.665
sdiA
Regulatory protein SdiA.
 
   
0.631
OSB_29220
Hypothetical protein.
  
     0.577
OSB_27080
Hypothetical protein.
  
     0.547
OSB_29850
Hypothetical protein.
  
     0.515
OSB_01040
Peptidase inhibitor I78 family protein.
  
     0.478
fliG
Flagellar motor switch protein FliG.
     
 0.476
OSB_22920
Hypothetical protein.
  
     0.460
cpoB
Hypothetical protein; Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division; Belongs to the CpoB family.
  
     0.451
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.