STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvT_2Aminomethyltransferase; Belongs to the GcvT family. (975 aa)    
Predicted Functional Partners:
OSB_22470
Sarcosine oxidase, delta subunit family.
 
 0.999
soxB_2
Sarcosine oxidase subunit beta.
 
 0.998
OSB_12660
Sarcosine oxidase, delta subunit family.
 
 
 0.988
OSB_22450
Sarcosine oxidase, gamma subunit family.
 
 
 0.985
OSB_12680
Sarcosine oxidase, gamma subunit family.
 
 
 0.968
soxB_1
Sarcosine oxidase subunit beta.
 
 
 0.943
bfmBAB
2-oxoisovalerate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.922
mlr_2
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
 
0.837
mlr_3
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
 
0.832
mlr_1
4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
 
 
0.819
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.