STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA_3Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (364 aa)    
Predicted Functional Partners:
OSB_23960
Hypothetical protein.
 
 0.993
ydcV_3
Inner membrane ABC transporter permease protein YdcV.
 
 0.992
potB_2
Spermidine/putrescine transport system permease protein PotB.
 
 0.992
msbA_2
Lipid A export ATP-binding/permease protein MsbA.
 
 
   
0.900
modB
Molybdenum transport system permease protein ModB; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
 
  
 0.863
prsD_1
Type I secretion system ATP-binding protein PrsD.
 
     
0.810
potH
Putrescine transport system permease protein PotH.
 
 0.715
potB_1
Spermidine/putrescine transport system permease protein PotB.
 
 0.704
ydcV_2
Inner membrane ABC transporter permease protein YdcV.
  
 0.701
ydcV_1
Inner membrane ABC transporter permease protein YdcV.
  
 0.679
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.