STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sugC_1Trehalose import ATP-binding protein SugC; Belongs to the ABC transporter superfamily. (298 aa)    
Predicted Functional Partners:
lacF_2
Lactose transport system permease protein LacF.
 
 0.993
araQ_3
L-arabinose transport system permease protein AraQ.
 
 0.992
OSB_25400
Putative sugar-binding periplasmic protein precursor.
 
 0.964
lacF_1
Lactose transport system permease protein LacF.
 
 0.959
araQ_1
L-arabinose transport system permease protein AraQ.
 
 0.952
sugB
Trehalose transport system permease protein SugB.
 
 0.937
ycjO_2
Inner membrane ABC transporter permease protein YcjO.
 
 0.922
tauB_3
Taurine import ATP-binding protein TauB.
     0.906
OSB_03340
Putative sugar-binding periplasmic protein precursor.
  
 0.877
OSB_12080
Bacterial extracellular solute-binding protein.
  
 0.877
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.