STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_2Cyclic di-GMP phosphodiesterase Gmr. (768 aa)    
Predicted Functional Partners:
evgS
Sensor protein EvgS precursor.
 
 0.984
pleD
Response regulator PleD.
 
0.849
cph2_2
Phytochrome-like protein cph2.
 
 
 
0.826
tmoS
Sensor histidine kinase TmoS.
 
 
 0.769
amtB_1
Ammonia channel precursor.
 
    
 0.768
phoR_2
Alkaline phosphatase synthesis sensor protein PhoR.
 
 
 0.765
dosC
Diguanylate cyclase DosC.
 
0.753
yegE
Putative diguanylate cyclase YegE.
 
0.752
tdiR
Transcriptional regulatory protein TdiR.
 
 
 
 0.723
adrB
Putative cyclic-di-GMP phosphodiesterase AdrB.
 
 
0.719
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.