STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_26350Xylose isomerase-like TIM barrel. (294 aa)    
Predicted Functional Partners:
iolE_2
Inosose dehydratase.
 
 
  0.977
ycjS
Putative oxidoreductase YcjS.
  
 
  0.904
idhA
Inositol 2-dehydrogenase.
  
 
  0.904
mglB
D-galactose-binding periplasmic protein precursor.
 
     0.889
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
     0.671
rbsA_2
Ribose import ATP-binding protein RbsA.
 
     0.648
iolB
5-deoxy-glucuronate isomerase.
 
    0.609
OSB_16060
LuxR family bacterial regulatory protein.
  
     0.452
OSB_26390
Hypothetical protein.
       0.434
rbsR
Ribose operon repressor.
       0.432
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.