STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_280702-keto-3-deoxy-galactonokinase. (301 aa)    
Predicted Functional Partners:
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase.
  
 0.998
dgoD
D-galactonate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
 0.956
araB
L-arabinolactonase.
 
   
 0.932
rafA
Alpha-galactosidase.
       0.855
OSB_28100
Beta-galactosidase.
 
     0.825
araQ_5
L-arabinose transport system permease protein AraQ.
 
     0.824
araP
L-arabinose transport system permease protein AraP.
 
     0.807
mro
Aldose 1-epimerase precursor.
 
     0.785
msmE
Multiple sugar-binding protein precursor.
 
     0.651
kdgR
Transcriptional regulator KdgR.
 
   
 0.570
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.