STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_28610Hypothetical protein. (69 aa)    
Predicted Functional Partners:
ttuE
Pyruvate kinase; Belongs to the pyruvate kinase family.
       0.766
rpmI
50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family.
     
 0.716
rplT
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
     
 0.706
OSB_06160
Hypothetical protein.
  
     0.675
OSB_12950
Hypothetical protein.
  
     0.648
OSB_27740
Hypothetical protein.
  
     0.635
OSB_22300
Hypothetical protein.
  
     0.616
OSB_27090
Hypothetical protein.
  
     0.599
OSB_31590
Hypothetical protein.
  
     0.584
OSB_10520
Type IV pilus biogenesis.
  
     0.583
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.