STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chrRAnti-sigma-E factor ChrR. (211 aa)    
Predicted Functional Partners:
rpoE
ECF RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.997
OSB_28770
Hypothetical protein.
 
  
 0.972
sigK
ECF RNA polymerase sigma factor SigK; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.951
OSB_28760
Hypothetical protein.
 
  
 0.947
cfa
Cyclopropane-fatty-acyl-phospholipid synthase.
 
   
 0.854
OSB_28740
Putative oxidoreductase.
 
   
 0.798
OSB_28720
Hypothetical protein.
 
     0.628
OSB_28800
Immunogenic protein MPT70 precursor.
     
 0.523
OSB_28730
Hypothetical protein.
       0.512
rpoH
RNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.
   
  
 0.435
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.