STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OSB_29670Tripartite tricarboxylate transporter family receptor. (328 aa)    
Predicted Functional Partners:
OSB_29660
Tripartite tricarboxylate transporter TctB family protein.
 
  
 0.958
OSB_29650
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.947
OSB_08070
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.879
OSB_26740
Tripartite tricarboxylate transporter TctA family protein.
 
  
 0.878
qseC
Sensor protein QseC.
 
   
 0.870
OSB_29700
Hypothetical protein.
 
     0.837
OSB_26730
Tripartite tricarboxylate transporter family receptor.
  
     0.745
tctD
Transcriptional regulatory protein tctD.
 
     0.723
OSB_08050
Tripartite tricarboxylate transporter family receptor.
  
     0.712
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.