STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
novRDecarboxylase NovR. (251 aa)    
Predicted Functional Partners:
mcl2
(3S)-malyl-CoA thioesterase; Belongs to the HpcH/HpaI aldolase family.
   
    0.766
mcl1
Malyl-CoA lyase; Belongs to the HpcH/HpaI aldolase family.
   
    0.766
OSB_31130
Hypothetical protein.
 
     0.700
aruH
Arginine--pyruvate transaminase AruH.
 
  
 0.693
xylB
Xylulose kinase.
  
  
 0.632
amn
AMP nucleosidase; Catalyzes the hydrolysis of the N-glycosidic bond of AMP to form adenine and ribose 5-phosphate. Involved in regulation of AMP concentrations.
     
 0.626
mmgC_5
Acyl-CoA dehydrogenase.
 
    0.622
caiD
Carnitinyl-CoA dehydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
    0.614
OSB_08360
Hypothetical protein.
 
     0.562
lcdH
L-carnitine dehydrogenase; Catalyzes the NAD(+)-dependent oxidation of L-carnitine to 3- dehydrocarnitine.
 
  
 0.551
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.