STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
addAATP-dependent helicase/nuclease subunit A; Belongs to the helicase family. UvrD subfamily. (1129 aa)    
Predicted Functional Partners:
OSB_32240
PD-(D/E)XK nuclease superfamily protein.
   
 0.959
recD2
ATP-dependent RecD-like DNA helicase.
  
 
 0.951
tsaE
tRNA threonylcarbamoyladenosine biosynthesis protein TsaE.
     
 0.870
rfbF
Glucose-1-phosphate cytidylyltransferase.
       0.855
OSB_32260
Phosphotransferase enzyme family protein.
       0.855
divL
Sensor protein DivL.
       0.780
trxA_2
Thioredoxin; Belongs to the thioredoxin family.
  
    0.754
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
   
 0.722
OSB_17580
Stringent starvation protein B.
  
     0.696
regB
Sensor histidine kinase RegB.
  
    0.687
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.