STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvA_2Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
hcaR
Hca operon transcriptional activator; Belongs to the LysR transcriptional regulatory family.
  
     0.703
cynR_1
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.685
cynR_2
HTH-type transcriptional regulator CynR; Belongs to the LysR transcriptional regulatory family.
  
     0.671
yofA
HTH-type transcriptional regulator YofA; Belongs to the LysR transcriptional regulatory family.
  
     0.665
OSB_32330
Hypothetical protein.
       0.552
gltB
Glutamate synthase [NADPH] large chain precursor.
  
  
 0.479
accB
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
  
 0.430
mltG
Putative aminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
   
  
 0.418
Your Current Organism:
Octadecabacter temperatus
NCBI taxonomy Id: 1458307
Other names: DSM 26878, LMG 27946, LMG:27946, O. temperatus, Octadecabacter sp. SB1, Octadecabacter temperatus Billerbeck et al. 2015, strain SB1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.