STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG58_15265LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family. (336 aa)    
Predicted Functional Partners:
BG58_15270
Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.705
BG58_18780
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.646
BG58_21825
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.609
BG58_41255
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.495
BG58_15760
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.484
BG58_12175
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.449
BG58_15260
Lipase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.449
BG58_15275
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.416
BG58_12850
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.405
BG58_36435
LysR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Caballeronia jiangsuensis
NCBI taxonomy Id: 1458357
Other names: Burkholderia jiangsuensis, Burkholderia jiangsuensis Liu et al. 2014, Burkholderia sp. MP-1, C. jiangsuensis, Caballeronia jiangsuensis (Liu et al. 2014) Dobritsa and Samadpour 2016, LMG 27927, LMG:27927, MCCC 1K00250, strain MP-1
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