STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BG58_34045LacI family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)    
Predicted Functional Partners:
BG58_34035
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
  0.984
BG58_34050
Sugar ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the binding-protein-dependent transport system permease family.
 
  0.982
BG58_03045
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.972
BG58_01105
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.967
BG58_09395
Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
BG58_24555
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.964
BG58_34040
Sugar ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.964
BG58_33320
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.959
BG58_27470
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
BG58_35310
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.956
Your Current Organism:
Caballeronia jiangsuensis
NCBI taxonomy Id: 1458357
Other names: Burkholderia jiangsuensis, Burkholderia jiangsuensis Liu et al. 2014, Burkholderia sp. MP-1, C. jiangsuensis, Caballeronia jiangsuensis (Liu et al. 2014) Dobritsa and Samadpour 2016, LMG 27927, LMG:27927, MCCC 1K00250, strain MP-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.