STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SRAA_0219Biotin carboxylase; Identified by MetaGeneAnnotator; putative. (1208 aa)    
Predicted Functional Partners:
SRAA_0220
asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; Identified by MetaGeneAnnotator; putative.
  
 0.999
SRAA_0233
Transcriptional regulator; Identified by MetaGeneAnnotator; putative.
  
    0.973
SRAA_0530
Transcriptional regulator; Identified by MetaGeneAnnotator; putative.
  
    0.973
SRAA_1364
Transcriptional regulator; Identified by MetaGeneAnnotator; putative.
  
    0.973
SRAA_0218
Uncharacterized conserved protein; Identified by MetaGeneAnnotator; putative.
 
   
 0.950
SRAA_0217
Uncharacterized conserved protein; Identified by MetaGeneAnnotator; putative.
 
   
 0.940
bccP
Biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.940
ureC
Urea amidohydrolase (urease) alpha subunit; Identified by MetaGeneAnnotator; putative.
    
 0.936
ureB
Urea amidohydrolase (urease) beta subunit; Identified by MetaGeneAnnotator; putative; Belongs to the urease beta subunit family.
    
 0.934
ureA
Urea amidohydrolase (urease) gamma subunit; Identified by MetaGeneAnnotator; putative; Belongs to the urease gamma subunit family.
     
 0.907
Your Current Organism:
Serpentinomonas raichei
NCBI taxonomy Id: 1458425
Other names: Comamonadaceae bacterium A1, Comamonadaceae bacterium H1, S. raichei, strain A1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.