STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCB_0030Transcriptional regulator; Identified by MetaGeneAnnotator; putative; Belongs to the LysR transcriptional regulatory family. (320 aa)    
Predicted Functional Partners:
ubiA
4-hydroxybenzoate polyprenyltransferase and related prenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.815
SMCB_0029
RecG-like helicase; Identified by MetaGeneAnnotator; putative.
       0.617
gltB
Glutamate synthase domain 2; Identified by MetaGeneAnnotator; putative.
     
 0.509
SMCB_1846
Transcriptional regulator; Identified by MetaGeneAnnotator; putative; Belongs to the LysR transcriptional regulatory family.
  
     0.496
SMCB_0028
Ca2+/Na+ antiporter; Identified by MetaGeneAnnotator; putative.
  
    0.484
Your Current Organism:
Serpentinomonas mccroryi
NCBI taxonomy Id: 1458426
Other names: Comamonadaceae bacterium B1, S. mccroryi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.