STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCB_0794Homoserine trans-succinylase; Identified by MetaGeneAnnotator; putative. (149 aa)    
Predicted Functional Partners:
SMCB_0795
Hypothetical protein; Identified by MetaGeneAnnotator; putative.
 
 0.999
SMCB_0832
Hypothetical protein; Identified by MetaGeneAnnotator; putative.
 
 0.996
SMCB_0796
Predicted dehydrogenase and related protein; Identified by MetaGeneAnnotator; putative.
 
  
 0.995
SMCB_0793
Predicted metal-dependent hydrolase of the TIM-barrel fold; Identified by MetaGeneAnnotator; putative.
 
  
 0.991
SMCB_0831
Hypothetical protein; Identified by MetaGeneAnnotator; putative.
 
 
0.973
SMCB_0812
Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenase, large terminal subunit; Identified by MetaGeneAnnotator; putative.
 
  
 0.962
SMCB_0811
Flavodoxin reductase family 1; ferredoxin-NADPH reductase; identified by MetaGeneAnnotator; putative.
  
  
  0.922
SMCB_0791
Predicted metal-dependent hydrolase of the TIM-barrel fold; Identified by MetaGeneAnnotator; putative.
 
   
 0.906
SMCB_0792
Demethylmenaquinone methyltransferase; Identified by MetaGeneAnnotator; putative.
 
   
 0.843
SMCB_0790
ABC-type molybdate transport system, periplasmic component; Identified by MetaGeneAnnotator; putative.
 
     0.630
Your Current Organism:
Serpentinomonas mccroryi
NCBI taxonomy Id: 1458426
Other names: Comamonadaceae bacterium B1, S. mccroryi
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.