STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMCB_2088Phosphatidylglycerophosphatase A and related protein; Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG). (204 aa)    
Predicted Functional Partners:
SMCB_0902
Phosphatidylglycerophosphate synthase; Identified by MetaGeneAnnotator; putative; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
  
 0.955
clsB
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase and related enzyme; Catalyzes the phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol.
     
 0.914
SMCB_2087
Uncharacterized protein; Identified by MetaGeneAnnotator; putative; Belongs to the CinA family.
       0.811
SMCB_2089
NTP pyrophosphohydrolase including oxidative damage repair enzyme; Identified by MetaGeneAnnotator; putative.
       0.773
thiL
Thiamine monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family.
  
  
 0.683
ribA
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.570
SMCB_0447
Pyrimidine reductase, riboflavin biosynthesis; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.559
apaG
Uncharacterized protein affecting Mg2+/Co2+ transport; Identified by MetaGeneAnnotator; putative.
       0.479
psd
Phosphatidylserine decarboxylase; Catalyzes the formation of phosphatidylethanolamine (PtdEtn) from phosphatidylserine (PtdSer).
     
 0.418
SMCB_2092
Pentose-5-phosphate-3-epimerase; Identified by MetaGeneAnnotator; putative; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.416
Your Current Organism:
Serpentinomonas mccroryi
NCBI taxonomy Id: 1458426
Other names: Comamonadaceae bacterium B1, S. mccroryi
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